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• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (392 superfamilies)
• Families (667 families)
• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

• Protein Links

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3viv » Membrane protease specific for a stomatin homolog, dimer

• Type: 1. Transmembrane (3 classes)
• Class: 1.1. Alpha-helical polytopic (72 superfamilies)
• Superfamily: 1.1.59. ClpP/Crotonase, transmembrane (1 family)
• Family: 1.1.59.01. ClpP protease (3 proteins)
• Species: Pyrococcus horikoshii (9 proteins)
• Localization: Archaebacterial membrane (54 proteins)

3viv » Membrane protease specific for a stomatin homolog, dimer
Hydrophobic Thickness	4.5 ± 0.4 Å
Tilt Angle	88 ± 9°
ΔGtransfer	-9.5 kcal/mol
Links to 3viv	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	cytoplasmic
Resolution	2.25 Å
Other PDB entries of this protein	2deo, 3bpp
Number of TM subunits	2

Experimental Verification for 3viv » Membrane protease specific for a stomatin homolog, dimer
This protein probably has an additional C-terminal domain with 4 TM alpha-helices (Yokoyama et al. 2006) - compatible with the calculated orientation.

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA