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• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (392 superfamilies)
• Families (667 families)
• Species (538 species)
• Localization (24 types)
• All proteins in OPM (2172 proteins)

• Protein Links

• PDB Sum,
• PDB,
• OCA,
• MPKS,
• PDBTM,
• MPDB,
• CGDB

4doj » Glycine betaine transporter BetP, asymmetric trimer, conformation 2

• Type: 1. Transmembrane (3 classes)
• Class: 1.1. Alpha-helical polytopic (72 superfamilies)
• Superfamily: 1.1.26. APC (Amino acid-Polyamine-organoCation) superfamily (6 families) 2.A.3 (TCDB)
• Family: 1.1.26.04. Betaine/carnitine/choline transporters (7 proteins) 2.A.15 (TCDB)
• Species: Corynebacterium glutamicum (5 proteins)
• Localization: Bacterial Gram-positive plasma membrane (81 proteins)

4doj » Glycine betaine transporter BetP, asymmetric trimer, conformation 2
Hydrophobic Thickness	30.0 ± 0.6 Å
Tilt Angle	0 ± 0°
ΔGtransfer	-186.4 kcal/mol
Links to 4doj	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit A (N-terminus in)
Resolution	3.25 Å
Other PDB entries of this protein	none
Number of TM Secondary Structures	36

3 transmembrane subunits
A - Tilt: 10° - Segments: 1( 60- 80), 2( 91- 116), 3( 139- 162), 4( 178- 201), 5( 233- 262), 6( 277- 295), 7( 303- 323), 8( 362- 385), 9( 397- 420), 10( 450- 477), 11( 489- 508), 12( 517- 538)
B - Tilt: 10° - Segments: 1( 60- 80), 2( 91- 116), 3( 139- 162), 4( 178- 201), 5( 233- 262), 6( 277- 295), 7( 303- 323), 8( 362- 385), 9( 397- 420), 10( 450- 477), 11( 489- 508), 12( 517- 538)
C - Tilt: 10° - Segments: 1( 60- 80), 2( 91- 116), 3( 139- 162), 4( 178- 201), 5( 233- 262), 6( 277- 295), 7( 303- 323), 8( 362- 385), 9( 397- 420), 10( 450- 477), 11( 489- 508), 12( 517- 538)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA