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• Protein Classification

• Types (3 types)
• Classes (11 classes)
• Superfamilies (463 superfamilies)
• Families (861 families)
• Species (719 species)
• Localization (24 types)
• All proteins in OPM (3450 proteins)

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4jq6 » Proteorhodopsin

• Type: 1. Transmembrane (3 classes)
• Class: 1.1. Alpha-helical polytopic (106 superfamilies)
• Superfamily: 1.1.001. Rhodopsin-like receptors and pumps (6 families)
• Family: 1.1.01.01. Microbial and algal rhodopsins (37 proteins) 3.E.1 (TCDB)
• Species: Gamma-proteobacterium (3 proteins)
• Localization: Bacterial Gram-negative inner membrane (465 proteins)

4jq6 » Proteorhodopsin
Hydrophobic Thickness	28.4 ± 1.3 Å
Tilt Angle	0 ± 0°
ΔGtransfer	-188.5 kcal/mol
Links to 4jq6	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit A (N-terminus out)
Resolution	2.31 Å
Other PDB entries representing this structure	none
Number of TM Secondary Structures	42

6 transmembrane subunits
A - Tilt: 12° - Segments: 1( 11- 32), 2( 43- 62), 3( 73- 91), 4( 105- 124), 5( 130- 149), 6( 171- 190), 7( 199- 220)
B - Tilt: 13° - Segments: 1( 11- 33), 2( 43- 62), 3( 73- 92), 4( 105- 124), 5( 130- 149), 6( 171- 190), 7( 199- 220)
C - Tilt: 14° - Segments: 1( 11- 32), 2( 43- 63), 3( 73- 91), 4( 105- 124), 5( 130- 149), 6( 171- 190), 7( 199- 220)
D - Tilt: 12° - Segments: 1( 11- 32), 2( 43- 62), 3( 73- 91), 4( 105- 124), 5( 130- 149), 6( 171- 190), 7( 199- 220)
E - Tilt: 13° - Segments: 1( 11- 33), 2( 43- 62), 3( 73- 92), 4( 105- 124), 5( 130- 149), 6( 171- 190), 7( 199- 220)
F - Tilt: 14° - Segments: 1( 11- 32), 2( 43- 63), 3( 73- 91), 4( 105- 124), 5( 130- 149), 6( 171- 190), 7( 199- 220)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA