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• Protein Classification

• Types (3 types)
• Classes (11 classes)
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• Families (904 families)
• Species (772 species)
• Localization (24 types)
• All proteins in OPM (3809 proteins)

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5w68 » Type II secretion system protein GspD, pathogenic E. coli

• Type: 1. Transmembrane (3 classes)
• Class: 1.3. Beta-barrel transmembrane (32 superfamilies)
• Superfamily: 1.3.032. Outer bacterial membrane secretin (1 family) 1.B.22 (TCDB)
• Family: 1.3.32.01. Outer bacterial membrane secretion (5 proteins) 1.B.22 (TCDB)
• Species: Escherichia coli (264 proteins)
• Localization: Bacterial Gram-negative outer membrane (240 proteins)

5w68 » Type II secretion system protein GspD, pathogenic E. coli
Hydrophobic Thickness	19.4 ± 0.2 Å
Tilt Angle	0 ± 0°
ΔGtransfer	-147.2 kcal/mol
Links to 5w68	PDB Sum, PDB, SCOP, MSD, OCA, MMDB
Topology	subunit A (N-terminus in)
Resolution	3.30 Å
Other PDB entries representing this structure	none
Number of TM Secondary Structures	60

15 transmembrane subunits
A - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
B - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
C - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
D - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
E - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
F - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
G - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
H - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
I - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
J - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
K - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
L - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
M - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
N - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)
O - Tilt: 25° - Segments: 1( 380- 386), 2( 389- 395), 3( 449- 456), 4( 460- 466)

Copyright © 2005-2013 Andrei Lomize, Mikhail Lomize and Irina Pogozheva
University of Michigan, Ann Arbor, MI 48109 USA