PDB ID or protein name

Escherichia coli (240 proteins)

Family Protein Name PDB ID Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.1.04.01. Respiratory complex I 3rko Bact. Gram-neg inner 6 58 29.6 ± 0.0 9 ± 0 -236.7
1.1.05.02. Formate dehydrogenase 1kqf Bact. Gram-neg inner 6 15 33.7 ± 1.1 0 ± 0 -141.9
1.1.05.03. Respiratory Nitrate Reductase 1q16 Bact. Gram-neg inner 2 10 30.1 ± 0.9 0 ± 0 -126.9
1.1.05.05. Succinate dehydrogenase 1nek Bact. Gram-neg inner 6 18 32.0 ± 0.6 0 ± 0 -183.5
1.1.05.05. Fumarate reductase 1kf6 Bact. Gram-neg inner 2 6 30.2 ± 1.2 14 ± 2 -65.6
1.1.05.06. Ni/Fe-hydrogenase complex 4gd3 Bact. Gram-neg inner 3 6 27.2 ± 1.4 9 ± 1 -42.4
1.1.07.01. Ubiquinol Oxidase 1fft Bact. Gram-neg inner 3 19 29.5 ± 0.6 12 ± 0 -82.3
1.1.08.01. ATP synthase subunit b, peptide 1-33 1b9u Bact. Gram-neg inner 1 1 29.8 ± 4.0 41 ± 2 -23.1
1.1.08.01. F1F0 ATP synthase subunit c, deprotonated form 1c99 Bact. Gram-neg inner 1 2 30.2 ± 3.0 36 ± 3 -30.7
1.1.08.01. F1F0 ATP synthase, F0 complex 1c17 Bact. Gram-neg inner 13 28 34.6 ± 1.2 4 ± 0 -149.9
1.1.08.01. F1F0 ATP synthase subunit c 1a91 Bact. Gram-neg inner 1 2 28.4 ± 8.0 44 ± 4 -24.2
1.1.08.01. F1F0 ATP synthase subunit c, double mutant 1l6t Bact. Gram-neg inner 1 2 30.0 ± 4.4 36 ± 3 -28.2
1.1.10.01. ABC transporter BtuCD, complex with BtuF, structure 1 2qi9 Bact. Gram-neg inner 2 22 29.4 ± 0.9 4 ± 4 -123.5
1.1.10.01. ABC transporter BtuCD, a nucleotide-bound outward facing state 4r9u Bact. Gram-neg inner 2 20 28.6 ± 1.3 1 ± 1 -119.8
1.1.10.01. ABC transporter BtuCD, symmetric structure 1l7v Bact. Gram-neg inner 2 22 30.7 ± 1.1 0 ± 1 -121.0
1.1.10.01. ABC transporter BtuCD, nucleotide-bound state 4fi3 Bact. Gram-neg inner 2 20 29.0 ± 1.0 0 ± 0 -118.3
1.1.10.01. ABC transporter BtuCD, complex with BtuF, structure 2 4dbl Bact. Gram-neg inner 2 20 29.4 ± 1.0 4 ± 0 -123.4
1.1.10.02. Maltose transporter MalFGK, a pre-translocation state 3puz Bact. Gram-neg inner 2 14 29.0 ± 0.8 7 ± 0 -107.2
1.1.10.02. Methionine importer MetNI, conformation 3 3dhw Bact. Gram-neg inner 2 10 29.2 ± 1.0 1 ± 0 -82.5
1.1.10.02. Maltose transporter MalFGK, outward conformation 3puw Bact. Gram-neg inner 2 14 29.8 ± 1.3 3 ± 1 -94.0
1.1.10.02. Methionine importer MetNI, conformation 1 3tui Bact. Gram-neg inner 2 10 30.2 ± 1.3 1 ± 1 -81.0
1.1.10.02. Maltose transporter MalFGK, inward conformation, TMH 1 deleted 3fh6 Bact. Gram-neg inner 2 13 29.9 ± 0.6 3 ± 1 -97.8
1.1.10.02. Methionine importer MetNI, conformation 2 3tuj Bact. Gram-neg inner 2 10 30.4 ± 1.3 7 ± 1 -84.5
1.1.10.02. Maltose transporter MalFGK, complex with protein EIIAglc 4jbw Bact. Gram-neg inner 2 14 29.8 ± 0.8 4 ± 1 -107.8
1.1.10.03. Microcin-J25 export ATP-binding/permease protein McjD 4pl0 Bact. Gram-neg inner 2 12 32.4 ± 0.8 0 ± 0 -107.2
1.1.103.01. ExbB/ExbD complex, structure 2 5sv1 Bact. Gram-neg inner 6 16 30.8 ± 0.5 2 ± 0 -109.5
1.1.103.01. ExbB/ExbD complex, structure 1 5sv0 Bact. Gram-neg inner 5 15 31.8 ± 0.8 1 ± 1 -102.1
1.1.11.01. Ribosome-SecYE complex, structure 4 3kcr Bact. Gram-neg inner 3 12 29.2 ± 0.6 13 ± 0 -81.6
1.1.11.01. Holo-translocon 5mg3 Bact. Gram-neg inner 6 29 30.6 ± 0.8 5 ± 0 -123.2
1.1.11.01. Ribosome-SecYE complex, structure 1 3j01 Bact. Gram-neg inner 2 13 28.6 ± 0.0 5 ± 0 -86.4
1.1.11.01. Ribosome-SecYE complex, structure 3 3j46 Bact. Gram-neg inner 4 14 27.2 ± 1.0 14 ± 0 -56.8
1.1.11.01. Ribosome-SecYE complex, structure 2 3j45 Bact. Gram-neg inner 3 13 26.8 ± 0.2 10 ± 0 -65.3
1.1.14.01. Glycerol uptake facilitator 1ldf Bact. Gram-neg inner 4 32 30.1 ± 0.9 0 ± 0 -147.9
1.1.14.01. Aquaporin Z 1rc2 Bact. Gram-neg inner 4 32 29.7 ± 1.3 0 ± 0 -118.7
1.1.14.02. Formate transporter 1, FocA 3kcu Bact. Gram-neg inner 5 35 29.9 ± 0.7 0 ± 0 -160.9
1.1.17.01. Ammonia Channel 1u7g Bact. Gram-neg inner 3 33 29.8 ± 1.3 0 ± 0 -148.7
1.1.17.01. Ammonia channel, complex with inhibitory GlnK 2ns1 Bact. Gram-neg inner 3 33 29.1 ± 0.7 0 ± 0 -148.7
1.1.19.01. Mechanosensitive channel protein MscS, open state 5aji Bact. Gram-neg inner 7 21 29.8 ± 1.7 0 ± 0 -127.8
1.1.19.01. Mechanosensitive channel protein MscS, expanded state 2oau Bact. Gram-neg inner 7 14 31.8 ± 0.8 1 ± 1 -171.3
1.1.22.01. Pore-forming haemolysin E (ClyA) 2wcd Secreted 12 36 30.8 ± 0.7 0 ± 0 -148.3
1.1.25.01. Glycerol-3-phosphate transporter glpT 1pw4 Bact. Gram-neg inner 1 12 31.2 ± 1.4 1 ± 7 -92.5
1.1.25.02. Lactose permease LacY, structure 1 2cfq Bact. Gram-neg inner 1 12 31.9 ± 1.1 5 ± 1 -87.9
1.1.25.02. Lactose permease LacY, structure 2 2v8n Bact. Gram-neg inner 1 12 31.8 ± 0.8 5 ± 0 -86.4
1.1.25.02. Lactose permease LacY, structure 6 5gxb Bact. Gram-neg inner 1 12 33.8 ± 1.5 1 ± 1 -89.6
1.1.25.02. Lactose permease LacY, structure 4 2y5y Bact. Gram-neg inner 1 12 31.8 ± 1.3 4 ± 1 -89.0
1.1.25.02. Lactose permease lacY, structure at acidic pH 2cfp Bact. Gram-neg inner 1 12 31.1 ± 1.4 2 ± 2 -85.4
1.1.25.02. Lactose permease LacY, structure 5 4oaa Bact. Gram-neg inner 1 12 32.6 ± 1.6 2 ± 2 -101.7
1.1.25.02. Lactose permease LacY, structure 3 1pv6 Bact. Gram-neg inner 1 12 31.8 ± 1.2 5 ± 0 -89.1
1.1.25.03. Transporter YajR 3wdo Bact. Gram-neg inner 1 12 31.0 ± 1.4 2 ± 0 -81.8
1.1.25.03. Multidrug transporter EmrD 2gfp Bact. Gram-neg inner 1 12 31.6 ± 1.5 9 ± 0 -58.0
1.1.25.03. Multidrug transporter MdfA 4zp0 Bact. Gram-neg inner 1 12 29.8 ± 1.3 10 ± 0 -77.2
1.1.25.04. L-fucose-proton symporter fucP 3o7q Bact. Gram-neg inner 1 12 30.7 ± 1.3 6 ± 0 -85.3
1.1.25.05. Dipeptide permease D 4q65 Bact. Gram-neg inner 1 14 30.2 ± 0.8 7 ± 1 -101.4
1.1.25.06. D-xylose-proton symporter xylE, conformation 1 4gc0 Bact. Gram-neg inner 1 12 30.2 ± 0.9 1 ± 0 -90.2
1.1.25.06. D-xylose-proton symporter xylE, conformation 3 4ja4 Bact. Gram-neg inner 1 12 28.2 ± 1.3 0 ± 0 -82.8
1.1.25.06. D-xylose-proton symporter xylE, conformation 2 4ja3 Bact. Gram-neg inner 1 12 29.8 ± 1.0 4 ± 1 -87.6
1.1.25.06. D-xylose-proton symporter xylE, conformation 4 4qiq Bact. Gram-neg inner 1 12 29.8 ± 1.8 1 ± 1 -72.6
1.1.25.07. Nitrate/nitrite exchanger NarK, inward-open state 4u4t Bact. Gram-neg inner 1 12 31.2 ± 1.1 5 ± 1 -94.2
1.1.25.07. Nitrate/nitrite exchanger NarK, occluded state 4u4w Bact. Gram-neg inner 1 12 30.0 ± 1.4 10 ± 1 -91.0
1.1.25.07. Nitrite exporter NarU 4iu9 Bact. Gram-neg inner 1 12 31.0 ± 1.2 4 ± 0 -88.1
1.1.25.07. Nitrate/nitrite exchanger NarK, partially occluded state 4jr9 Bact. Gram-neg inner 1 12 29.6 ± 1.0 8 ± 0 -86.2
1.1.26.04. L-carnitine/gamma-butyrobetaine antiporter CaiT, substrate-bound 3hfx Bact. Gram-neg inner 3 42 29.8 ± 0.8 0 ± 0 -203.5
1.1.26.04. L-carnitine/gamma-butyrobetaine antiporter CaiT, open inward-facing conformation 2wsx Bact. Gram-neg inner 3 42 28.6 ± 0.7 7 ± 0 -212.7
1.1.26.05. Arginine/agmatine transporter (AdiC), substrate-bound 3l1l Bact. Gram-neg inner 2 24 28.8 ± 1.4 2 ± 2 -132.0
1.1.26.05. Arginine/agmatine antiporter (AdiC), outward-facing structure 1 3h5m Bact. Gram-neg inner 2 26 29.0 ± 0.8 0 ± 0 -128.9
1.1.26.05. Glutamate/gamma-aminobutyrate antiporter 4dji Bact. Gram-neg inner 1 12 30.0 ± 1.1 10 ± 1 -98.9
1.1.26.05. Arginine/agmatine transporter (AdiC), intermediate conformation 3ob6 Bact. Gram-neg inner 2 24 29.8 ± 1.4 3 ± 1 -158.7
1.1.26.05. Arginine/agmatine antiporter (AdiC), outward-facing structure 2 5j4i Bact. Gram-neg inner 2 24 32.8 ± 0.9 0 ± 0 -155.1
1.1.26.06. Uracil transporter UraA 3qe7 Bact. Gram-neg inner 1 14 27.7 ± 1.2 16 ± 0 -79.3
1.1.27.01. Ferrous-iron efflux pump fieF, different conformation 2qfi Bact. Gram-neg inner 2 12 25.0 ± 1.3 1 ± 2 -32.4
1.1.27.01. Ferrous-iron efflux pump fieF 3h90 Bact. Gram-neg inner 2 12 29.6 ± 0.8 0 ± 2 -83.9
1.1.28.01. Multidrug efflux transporter AcrB, asymmetric 2gif Bact. Gram-neg inner 3 36 29.0 ± 0.2 1 ± 0 -187.5
1.1.28.01. Multidrug efflux transporter AcrB, asymmetric, complex with ankyrin repeat 2 3nog Bact. Gram-neg inner 3 36 29.0 ± 0.5 3 ± 0 -202.9
1.1.28.01. Multidrug efflux transporter AcrB-AcrZ complex 4c48 Bact. Gram-neg inner 6 39 29.2 ± 0.8 0 ± 0 -217.3
1.1.28.01. Multidrug efflux transporter AcrB, symmetric 3d9b Bact. Gram-neg inner 3 36 28.4 ± 0.6 0 ± 0 -189.9
1.1.28.01. Multidrug efflux transporter AcrB, asymmetric, complex with ankyrin repeat 1 4dx5 Bact. Gram-neg inner 3 36 27.4 ± 0.7 1 ± 0 -181.0
1.1.28.01. Multidrug efflux transporter AcrB with YajC subunit , symmetric 2rdd Bact. Gram-neg inner 6 39 28.4 ± 0.5 0 ± 0 -156.2
1.1.28.02. Efflux transporter CusA, Cu(i) complex 3kss Bact. Gram-neg inner 3 33 28.8 ± 0.5 0 ± 0 -147.7
1.1.28.02. Efflux transporter CusA, complex with CusB 3ne5 Bact. Gram-neg inner 3 36 29.0 ± 0.7 0 ± 0 -165.0
1.1.28.02. Efflux transporter CusA, apo-protein 3k07 Bact. Gram-neg inner 3 33 27.4 ± 1.2 0 ± 0 -166.7
1.1.28.02. Efflux transporter CusA, complex with CusB, pre-extrusion state 3t56 Bact. Gram-neg inner 3 36 30.4 ± 0.6 0 ± 0 -153.7
1.1.30.01. Membrane protein insertase YidC, periplasmic domain 3blc Bact. Gram-neg inner 1 0 6.6 ± 0.5 40 ± 11 -7.0
1.1.30.01. Membrane protein insertase YidC, structure 1 3wvf Bact. Gram-neg inner 1 5 26.8 ± 1.3 10 ± 2 -46.7
1.1.30.01. Membrane protein insertase YidC, structure 2 5m5h Bact. Gram-neg inner 1 5 30.2 ± 2.2 18 ± 1 -41.3
1.1.35.01. Sodium/proton antiporter 1 (NhaA) 1zcd Bact. Gram-neg inner 1 14 28.4 ± 1.4 2 ± 2 -78.6
1.1.35.01. Sodium/proton antiporter 1 (NhaA), dimer 3fi1 Bact. Gram-neg inner 2 24 28.4 ± 1.6 2 ± 1 -126.7
1.1.35.01. Sodium/proton antiporter 1 (NhaA), dimer, different conformation 4atv Bact. Gram-neg inner 2 24 28.6 ± 1.3 1 ± 0 -154.7
1.1.36.01. ClC chloride transporter 1ots Bact. Gram-neg inner 2 28 29.7 ± 0.8 0 ± 0 -115.3
1.1.38.01. Multidrug transporter MatE 4z3n Bact. Gram-neg inner 1 12 29.6 ± 1.1 7 ± 1 -93.1
1.1.41.01. Bacterial semiSWEET transporter, outward-open conformation 4x5n Bact. Gram-neg inner 2 6 36.8 ± 1.1 1 ± 3 -70.5
1.1.41.01. Bacterial semiSWEET transporter, inward-open conformation 4x5m Bact. Gram-neg inner 2 6 31.6 ± 1.9 0 ± 3 -66.6
1.1.44.01. Disulfide bond formation protein B, conformation 3 2zuq Bact. Gram-neg inner 1 4 27.9 ± 3.1 27 ± 1 -36.6
1.1.44.01. Disulfide bond formation protein B, conformation 2 2ltq Bact. Gram-neg inner 1 4 28.4 ± 1.5 26 ± 0 -36.5
1.1.44.01. DsbB - DsbA complex, conformation 4 3e9j Bact. Gram-neg inner 1 4 26.8 ± 1.5 31 ± 1 -27.1
1.1.44.01. DsbB - DsbA complex, conformation 1 2hi7 Bact. Gram-neg inner 1 4 24.3 ± 3.0 30 ± 0 -34.9
1.1.44.01. DsbB - DsbA complex, conformation 2 2zup Bact. Gram-neg inner 1 4 24.2 ± 2.9 3 ± 8 -18.3
1.1.44.01. Disulfide bond formation protein B, conformation 1 2k74 Bact. Gram-neg inner 1 4 29.7 ± 2.4 26 ± 1 -50.2
1.1.44.01. DsbB-DsbA complex, conformation 3 2leg Bact. Gram-neg inner 1 4 30.6 ± 1.7 34 ± 2 -36.3
1.1.47.01. Sensor protein qseC 2kse Bact. Gram-neg inner 1 2 31.3 ± 2.5 19 ± 0 -35.7
1.1.47.01. Aerobic respiration control sensor protein acrB 2ksd Bact. Gram-neg inner 1 2 27.9 ± 2.8 9 ± 1 -33.6
1.1.47.01. Sensor protein kdpD 2ksf Bact. Gram-neg inner 1 4 26.2 ± 4.0 45 ± 1 -27.9
1.1.49.01. ATP-dependent zinc metalloprotease FtsH 1lv7 Bact. Gram-neg inner 1 0 2.1 ± 1.0 80 ± 11 -4.3
1.1.54.01. Diacylglycerol kinase (DAGK), NMR model 2kdc Bact. Gram-neg inner 3 9 25.5 ± 1.8 0 ± 0 -39.9
1.1.54.01. Diacylglycerol kinase (DAGK), conformation 1 3ze5 Bact. Gram-neg inner 3 9 29.8 ± 0.9 2 ± 1 -72.5
1.1.54.01. Diacylglycerol kinase (DAGK), conformation 3 4d2e Bact. Gram-neg inner 3 9 29.8 ± 0.7 2 ± 0 -65.6
1.1.54.01. Diacylglycerol kinase (DAGK), conformation 2 4bpd Bact. Gram-neg inner 3 9 29.4 ± 1.3 3 ± 2 -71.0
1.1.55.01. Bacterial polysaccharide co-polymerase FepE 3b8n Bact. Gram-neg inner 9 0 1.6 ± 0.1 1 ± 0 -20.3
1.1.60.01. Protease GlpG, complex with inhibitor, conformation 1 2xow Bact. Gram-neg inner 1 6 29.0 ± 1.7 15 ± 2 -59.0
1.1.60.01. Protease GlpG, conformation 1 2xtv Bact. Gram-neg inner 1 6 28.8 ± 1.6 14 ± 1 -61.1
1.1.60.01. Protease GlpG, conformation 3 2irv Bact. Gram-neg inner 1 6 28.2 ± 1.3 23 ± 5 -48.1
1.1.60.01. Protease GlpG, complex with inhibitor, conformation 2 3zeb Bact. Gram-neg inner 1 6 28.4 ± 1.3 12 ± 0 -64.0
1.1.60.01. Protease GlpG, conformation 2 2nrf Bact. Gram-neg inner 1 6 27.6 ± 1.5 13 ± 2 -45.9
1.1.60.01. Protease GlpG, complex with inhibitor, conformation 3 3ubb Bact. Gram-neg inner 1 6 29.8 ± 1.3 21 ± 1 -65.3
1.1.60.01. Protease GlpG, crystallographic trimer 4h1d Bact. Gram-neg inner 3 18 27.0 ± 0.1 2 ± 0 -108.7
1.1.60.01. Protease GlpG, complex with peptide-based inhibitor 4qo2 Bact. Gram-neg inner 1 6 28.6 ± 1.2 18 ± 0 -58.3
1.1.63.01. Type 1 signal peptidase, apo-enzyme 1kn9 Bact. Gram-neg inner 1 0 3.4 ± 1.4 80 ± 6 -7.8
1.1.63.01. Type 1 signal peptidase, complex with inhibitor 1b12 Bact. Gram-neg inner 1 0 5.4 ± 1.8 88 ± 7 -5.1
1.1.63.01. Signal peptidase I 3iiq Bact. Gram-neg inner 2 0 4.3 ± 0.5 57 ± 2 -10.2
1.1.63.01. Type 1 signal peptidase, complex with lipopeptide inhibitor 1t7d Bact. Gram-neg inner 1 0 3.9 ± 1.0 65 ± 11 -7.6
1.1.73.01. Outer membrane complex of type IV secretion system (VirB7/VirB9/VirB10 complex) 3jqo Bact. Gram-neg outer 14 14 22.6 ± 0.6 0 ± 0 -67.4
1.1.75.02. Sec-independent protein translocase TatA 2lzr Bact. Gram-neg inner 1 1 29.2 ± 1.8 26 ± 2 -29.1
1.1.75.02. Sec-independent protein translocase TatA, dimer 2mn6 Bact. Gram-neg inner 2 2 23.0 ± 1.2 47 ± 0 -26.5
1.1.75.02. Sec-independent protein translocase TatA, nonamer model 2lzs Bact. Gram-neg inner 9 9 29.2 ± 1.8 26 ± 2 -29.1
1.1.75.03. Sec-independent protein translocase protein TatB 2mi2 Bact. Gram-neg inner 1 1 27.6 ± 2.5 22 ± 0 -18.5
1.1.87.01. Phosphatidylglycerophosphatase 5jwy Bact. Gram-neg inner 1 6 30.8 ± 0.0 16 ± 2 -38.8
1.1.89.01. Inner membrane protein YgaP 2mpn Bact. Gram-neg inner 2 4 30.0 ± 1.5 0 ± 1 -29.6
1.1.94.01. Ascorbate-specific permease IIC component UlaA, structure 2 4rp9 Bact. Gram-neg inner 2 22 29.8 ± 0.6 2 ± 0 -141.1
1.1.94.01. Ascorbate-specific permease IIC component UlaA, structure 1 4rp8 Bact. Gram-neg inner 2 22 29.6 ± 0.4 3 ± 0 -129.1
1.1.96.01. Fluoride ion transporter CrcB 5a43 Bact. Gram-neg inner 2 8 31.8 ± 0.9 11 ± 0 -89.3
1.1.99.01. Prolipoprotein diacylglyceryl transferase 5azb Bact. Gram-neg inner 1 7 30.2 ± 1.5 8 ± 1 -68.8
1.2.26.01. Outer membrane lipoprotein Wza, water-soluble part 2w8h Bact. Gram-neg outer 8 0 1.6 ± 0.2 1 ± 0 -22.1
1.2.26.01. Outer membrane lipoprotein Wza 2j58 Bact. Gram-neg outer 8 8 31.1 ± 0.8 0 ± 0 -123.8
1.2.38.01. Penicillin-binding protein 1B 5hlb Bact. Gram-neg inner 1 1 30.0 ± 2.0 33 ± 1 -21.7
1.2.38.03. Endo-type membrane-bound lytic murein transglycosylase A 2y8p Bact. Gram-neg outer 1 0 0.0 ± 3.6 86 ± 15 -2.2
1.2.52.01. Cytochrome c-type biogenesis protein CcmE 1sr3 Bact. Gram-neg inner 1 0 2.8 ± 2.7 59 ± 6 -2.2
1.2.54.01. Dihydroorotate dehydrogenase 1f76 Bact. Gram-neg outer 1 0 3.7 ± 0.8 24 ± 8 -8.7
1.3.01.01. Outer membrane protein A (OMPA), disordered loops 1qjp Bact. Gram-neg outer 1 8 25.4 ± 1.5 11 ± 1 -29.5
1.3.01.01. Outer membrane protein A (OMPA) 1bxw Bact. Gram-neg outer 1 8 25.4 ± 1.9 5 ± 1 -35.6
1.3.01.02. Outer membrane protein X (OMPX) 1qj8 Bact. Gram-neg outer 1 8 23.6 ± 2.8 12 ± 5 -30.7
1.3.03.01. Outer membrane protein W, NMR model 2mhl Bact. Gram-neg outer 1 8 23.4 ± 1.8 17 ± 0 -25.7
1.3.03.01. Outer membrane protein W 2f1v Bact. Gram-neg outer 1 8 25.4 ± 1.4 10 ± 3 -38.3
1.3.04.03. Lipid A acylase PagP, different conformation of loops 1thq Bact. Gram-neg outer 1 8 23.4 ± 2.5 27 ± 3 -31.3
1.3.04.03. Lipid A acylase PagP 3gp6 Bact. Gram-neg outer 1 8 24.7 ± 1.5 40 ± 1 -32.5
1.3.07.01. Outer membrane protease OmpT 1i78 Bact. Gram-neg outer 1 10 26.5 ± 1.6 5 ± 6 -46.9
1.3.10.01. Acidic sugar-specific porin NanC 2wjr Bact. Gram-neg outer 1 12 23.3 ± 1.5 4 ± 4 -47.5
1.3.11.01. Serine protease EspP, pre-cleavage structure 3slj Bact. Gram-neg outer 1 12 25.4 ± 1.2 6 ± 1 -53.1
1.3.11.01. Diffuse adherence adhesin 4mee Bact. Gram-neg outer 1 12 26.4 ± 2.4 5 ± 1 -46.6
1.3.11.01. Serine protease EspP, post-cleavage structure 2qom Bact. Gram-neg outer 1 12 25.1 ± 1.6 6 ± 7 -55.9
1.3.11.01. Hemoglobin-binding protease Hbp autotransporter 3aeh Bact. Gram-neg outer 1 12 25.2 ± 1.1 4 ± 0 -41.9
1.3.11.02. Intimin 4e1s Bact. Gram-neg outer 1 12 24.4 ± 1.6 9 ± 2 -45.2
1.3.12.01. Outer membrane phospholipase A, monomer 1qd5 Bact. Gram-neg outer 1 12 24.6 ± 1.2 6 ± 0 -52.6
1.3.12.01. Outer membrane phospholipase A, dimer 1qd6 Bact. Gram-neg outer 2 24 23.9 ± 1.0 0 ± 0 -77.2
1.3.13.01. Bacterial Nucleoside Transporter Ts 1tly Bact. Gram-neg outer 1 12 23.4 ± 1.5 8 ± 0 -48.1
1.3.14.01. Fatty Acid Transporter FadL 1t16 Bact. Gram-neg outer 1 14 25.4 ± 1.3 6 ± 7 -58.0
1.3.14.01. Fatty Acid Transporter FadL, delS3, open channel 2r88 Bact. Gram-neg outer 1 14 24.0 ± 1.4 6 ± 2 -53.8
1.3.14.01. Fatty Acid Transporter FadL, F3E, open channel 3pgu Bact. Gram-neg outer 1 14 25.2 ± 1.5 1 ± 1 -51.5
1.3.14.01. Fatty Acid Transporter FadL, D348R, open channel 3pgr Bact. Gram-neg outer 1 14 25.4 ± 1.4 3 ± 1 -50.8
1.3.15.01. Outer membrane protein G (OMPG), open state 2 2x9k Bact. Gram-neg outer 1 14 24.7 ± 1.2 5 ± 2 -62.7
1.3.15.01. Outer membrane protein G (OMPG), with truncated extracellular loops 4ctd Bact. Gram-neg outer 1 14 24.6 ± 1.3 3 ± 1 -55.6
1.3.15.01. Outer membrane protein G (OMPG), closed state 2iww Bact. Gram-neg outer 1 14 24.7 ± 1.4 6 ± 4 -63.3
1.3.15.01. Outer membrane protein G (OMPG), open state 1 2iwv Bact. Gram-neg outer 1 14 25.3 ± 1.4 3 ± 5 -61.3
1.3.16.01. Osmoporin OMPC 2j1n Bact. Gram-neg outer 3 48 25.1 ± 1.2 0 ± 2 -126.2
1.3.16.01. Osmoporin OMPC, isoform 2 2ixw Bact. Gram-neg outer 3 48 24.5 ± 1.0 0 ± 0 -121.0
1.3.16.01. Osmoporin OMPC, isoform 1 2ixx Bact. Gram-neg outer 3 48 26.2 ± 1.3 0 ± 1 -142.5
1.3.16.01. Phosphoporin (PhoE) 1pho Bact. Gram-neg outer 3 48 24.1 ± 1.2 0 ± 0 -134.1
1.3.16.01. Porin OmpF 3pox Bact. Gram-neg outer 3 48 24.0 ± 0.8 0 ± 0 -136.2
1.3.17.02. Translocation and assembly module TamA 4c00 Bact. Gram-neg outer 1 16 23.4 ± 1.3 7 ± 1 -52.2
1.3.17.02. BamA domains 3efc Bact. Gram-neg outer 1 0 4.2 ± 2.2 85 ± 9 -5.5
1.3.17.02. BamABCDE complex, structure 1 5ayw Bact. Gram-neg outer 1 16 22.8 ± 1.2 7 ± 0 -57.5
1.3.17.02. BamABCDE complex, structure 2 5ljo Bact. Gram-neg outer 1 16 23.2 ± 0.4 13 ± 0 -55.7
1.3.17.02. Outer membrane protein assembly factor BamA 4c4v Bact. Gram-neg outer 1 16 23.6 ± 1.0 10 ± 0 -65.1
1.3.17.02. BamB-BamA P3-5 complex 4xga Bact. Gram-neg outer 2 0 6.9 ± 1.2 88 ± 38 -6.3
1.3.17.02. BamACDE subcomplex, structure 2 5d0q Bact. Gram-neg outer 1 16 22.8 ± 1.1 10 ± 0 -44.9
1.3.17.02. BamACDE subcomplex, structure 1 5ekq Bact. Gram-neg outer 1 16 23.4 ± 0.7 18 ± 0 -61.9
1.3.17.02. BamCD lipoprotein complex 3tgo Bact. Gram-neg outer 2 0 3.7 ± 2.1 81 ± 20 -3.3
1.3.17.02. Outer membrane protein assembly factor BamA 4n75 Bact. Gram-neg outer 1 16 23.8 ± 0.8 11 ± 0 -61.1
1.3.18.01. Maltoporin 1af6 Bact. Gram-neg outer 3 54 25.1 ± 0.7 0 ± 0 -117.9
1.3.20.01. Outer membrane transporter FecA, different conformation 1kmp Bact. Gram-neg outer 1 22 24.9 ± 0.9 4 ± 0 -74.0
1.3.20.01. Outer membrane cobalamin transporter BtuB, complex with TonB 2gsk Bact. Gram-neg outer 1 22 23.4 ± 0.7 5 ± 0 -77.5
1.3.20.01. Colicin I receptor complex with binding domain of Colicin Ia 2hdi Bact. Gram-neg outer 1 22 23.4 ± 0.9 3 ± 3 -72.7
1.3.20.01. Ferric enterobactin receptor FepA 1fep Bact. Gram-neg outer 1 22 24.3 ± 1.1 1 ± 0 -77.2
1.3.20.01. Ferric hydroxamate uptake receptor FhuA, complex with TonB 2grx Bact. Gram-neg outer 1 22 24.6 ± 1.1 3 ± 0 -77.2
1.3.20.01. Outer membrane cobalamin transporter BtuB, meso form 2guf Bact. Gram-neg outer 1 22 23.4 ± 0.9 6 ± 7 -69.3
1.3.20.01. Outer membrane cobalamin transporter BtuB, complex with colicin E3 R-domain 1ujw Bact. Gram-neg outer 1 22 23.6 ± 1.1 5 ± 0 -71.5
1.3.20.01. Ferric hydroxamate uptake receptor FhuA 1qfg Bact. Gram-neg outer 1 22 24.7 ± 1.0 5 ± 1 -81.3
1.3.20.01. Outer membrane cobalamin transporter BtuB, complex with colicin E2 R-domain 2ysu Bact. Gram-neg outer 1 22 24.2 ± 1.0 5 ± 0 -75.2
1.3.20.01. Ferric hydroxamate uptake receptor FhuA, with microcin 4cu4 Bact. Gram-neg outer 1 22 24.6 ± 1.1 5 ± 0 -77.7
1.3.20.01. Outer membrane cobalamin transporter BtuB 1nqe Bact. Gram-neg outer 1 22 23.4 ± 1.0 5 ± 0 -68.8
1.3.20.01. Colicin I receptor 2hdf Bact. Gram-neg outer 1 22 23.4 ± 0.9 4 ± 0 -70.9
1.3.20.01. Outer membrane cobalamin transporter BtuB, with cyanocobalamin 3m8d Bact. Gram-neg outer 1 22 23.3 ± 0.8 6 ± 1 -70.5
1.3.20.01. Outer membrane transporter FecA 1kmo Bact. Gram-neg outer 1 22 24.5 ± 1.2 3 ± 0 -69.6
1.3.21.01. Outer membrane usher protein FimD, complex with FimC-FimF-FimG-FimH 4j3o Bact. Gram-neg outer 1 24 23.8 ± 1.4 1 ± 1 -52.9
1.3.21.01. Outer membrane usher protein FimD, complex with FimC-FimH 3rfz Bact. Gram-neg outer 1 24 23.8 ± 0.8 5 ± 0 -65.1
1.3.21.01. P pilus usher PapC translocation domain 2vqi Bact. Gram-neg outer 1 24 23.1 ± 1.0 3 ± 0 -61.0
1.3.21.01. Outer membrane usher protein FimD 3ohn Bact. Gram-neg outer 1 24 21.2 ± 1.1 5 ± 0 -45.4
1.3.24.01. Outer membrane protein TolC, mutant, open conformation 1 2wmz Bact. Gram-neg outer 3 12 24.4 ± 0.8 0 ± 0 -52.8
1.3.24.01. Outer membrane protein TolC 1ek9 Bact. Gram-neg outer 3 12 24.6 ± 1.4 0 ± 2 -56.1
1.3.24.01. Outer membrane protein TolC, mutant, open conformation 4 2xmn Bact. Gram-neg outer 3 12 23.6 ± 1.4 0 ± 0 -50.5
1.3.24.01. Cation efflux system protein CusC, monomer 4k7k Bact. Gram-neg outer 1 0 3.2 ± 0.9 85 ± 1 -7.2
1.3.24.01. Outer membrane protein TolC, mutant, open conformation 3 2vdd Bact. Gram-neg outer 3 12 24.4 ± 1.2 0 ± 0 -57.7
1.3.24.01. Cation efflux system protein CusC 3pik Bact. Gram-neg outer 3 12 24.3 ± 1.2 1 ± 0 -33.8
1.3.24.01. Outer membrane protein TolC, mutant, open conformation 2 2vde Bact. Gram-neg outer 3 12 24.4 ± 1.2 0 ± 0 -57.4
1.3.27.01. Capsule assembly protein Wzi 2ynk Bact. Gram-neg outer 1 18 23.8 ± 1.3 6 ± 1 -58.2
1.3.28.01. LPS-assembly protein complex, LptE and LptD 4rhb Bact. Gram-neg outer 2 26 23.4 ± 1.1 7 ± 0 -85.3
1.3.29.01. Bacterial amyloid secretion channel CsgG, structure 2 4uv3 Bact. Gram-neg outer 9 36 26.4 ± 0.9 0 ± 0 -84.6
1.3.29.01. Bacterial amyloid secretion channel CsgG, structure 1 4q79 Bact. Gram-neg outer 9 36 25.6 ± 0.6 0 ± 0 -82.4
1.3.31.01. Poly-beta-1,6-N-acetyl-D-glucosamine export protein (PgaA) 4y25 Bact. Gram-neg outer 1 14 23.6 ± 1.1 8 ± 0 -42.5
1.3.32.01. Type II secretion system protein D 5wq7 Bact. Gram-neg outer 15 60 23.8 ± 0.6 0 ± 0 -257.6
2.1.05.02. Farnesyl diphosphate synthase (Geranyltranstransferase) 1rqj Bact. Gram-neg inner 1 0 3.3 ± 0.7 87 ± 3 -7.7
2.1.26.01. Colicin-E1 2i88 Secreted 1 0 1.1 ± 3.3 58 ± 37 -1.7
2.1.26.01. Colicin A channel-forming domain 1col Secreted 1 0 1.8 ± 1.0 43 ± 11 -3.2
2.1.28.01. Heat-stable enterotoxin II 1ehs Secreted 1 0 1.4 ± 1.1 64 ± 11 -6.0
2.1.31.01. Colicin M, alternative orientation 2xmx Secreted 1 0 2.4 ± 2.3 82 ± 4 -4.8
2.1.31.01. Colicin-M 3da4 Bact. Gram-neg inner 1 0 2.5 ± 0.9 49 ± 11 -5.5
2.1.46.01. Protein yciE 3ogh Undefined 2 0 4.0 ± 1.0 88 ± 4 -9.7
2.2.01.01. F18 fimbrial adhesin AC, FedF 4b4q Secreted 1 0 1.8 ± 2.6 81 ± 20 -3.4
2.2.06.01. Outer membrane lipoprotein Blc 1qwd Bact. Gram-neg outer 1 0 3.2 ± 2.0 80 ± 15 -4.6
2.2.07.01. Protein yceI 1y0g Bact. Gram-neg inner 1 0 4.2 ± 1.5 24 ± 16 -2.1
2.2.12.05. Glucans biosynthesis protein G 1txk Bact. Gram-neg inner 1 0 2.3 ± 0.7 80 ± 8 -5.1
2.2.23.01. Lipoprotein BamB, conformation 1 3prw Bact. Gram-neg outer 1 0 5.1 ± 1.2 81 ± 7 -8.5
2.2.23.01. Lipoprotein BamB, conformation 3 3q7o Bact. Gram-neg outer 1 0 4.9 ± 1.5 69 ± 3 -6.9
2.2.23.01. Lipoprotein BamB, conformation 2 3p1l Bact. Gram-neg outer 1 0 3.6 ± 2.8 89 ± 10 -6.4
2.2.38.01. Colicin E3 1jch Secreted 4 0 2.8 ± 0.3 89 ± 5 -8.8
2.3.05.03. Glycerol-3-phosphate dehydrogenase (GlpD) 2qcu Bact. Gram-neg inner 1 0 4.5 ± 1.5 74 ± 11 -8.4
2.3.10.01. Peptidoglycan biosynthesis glycosyltransferase MurG, conformation 1 1nlm Bact. Gram-neg inner 1 0 4.8 ± 1.1 50 ± 7 -7.5
2.3.10.01. Peptidoglycan biosynthesis glycosyltransferase MurG, conformation 2 1f0k Bact. Gram-neg inner 1 0 5.3 ± 1.2 55 ± 7 -8.6
2.3.10.03. LPS heptosyltransferase II, WaaF 1psw Bact. Gram-neg inner 1 0 3.1 ± 1.1 58 ± 8 -5.6
2.3.10.03. Heptosyltransferase WaaC 2h1h Bact. Gram-neg inner 1 0 5.0 ± 1.1 67 ± 5 -9.1
2.3.10.07. Lipopolysaccharide biosynthesis protein RfaG 2iw1 Bact. Gram-neg inner 1 0 3.7 ± 3.1 85 ± 8 -6.0
2.3.10.07. Lipopolysaccharide biosynthesis protein RfaG, 103-131 2n58 Bact. Gram-neg inner 1 0 4.5 ± 1.1 64 ± 7 -6.3
2.3.13.03. Thiol-disulfide interchange protein DsbA 1u3a Bact. Gram-neg inner 1 0 2.2 ± 1.4 86 ± 8 -4.2
2.3.16.09. GTP-binding protein YjiA 1nij Bact. Gram-neg inner 1 0 3.4 ± 0.1 41 ± 1 -6.7
2.3.24.01. Phosphatase YidA 1rkq Undefined 1 0 2.5 ± 1.3 79 ± 9 -4.1
3.1.01.02. Leader peptide of bacteriocin microcin B17 2mlp Secreted 1 0 3.2 ± 3.6 84 ± 4 -6.6
3.1.02.03. Juxtamembrane helix of ATP synthase subunit b 2khk Bact. Gram-neg inner 1 0 1.9 ± 0.1 85 ± 3 -3.9
3.1.02.11. Methyl-accepting chemotaxis protein II 2l9g Bact. Gram-neg inner 1 0 8.1 ± 4.2 75 ± 0 -11.7
3.1.03.03. Membrane-bound helix of phosphotransferase IIA component 1o53 Bact. Gram-neg inner 1 0 3.3 ± 1.3 86 ± 15 -7.8
3.2.05.02. Microcin J25, peptide 38-58 1q71 Secreted 1 0 3.3 ± 3.2 75 ± 17 -5.2
3.2.05.02. Microcin J25, peptide 38-58, cleaved after 47 1s7p Secreted 1 0 4.7 ± 1.2 83 ± 18 -5.7
3.4.03.01. Heat-stable enterotoxin ST-IA/ST-P 1etn Secreted 1 0 3.0 ± 3.7 33 ± 39 -2.1