PDB ID or protein name

Human immunodeficiency virus type 1 (34 proteins)

Family Protein Name PDB ID Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.2.24.01. Protein Vpu, transmembrane helix 1pi7 Eukaryo. plasma 1 1 28.2 ± 5.4 38 ± 4 -23.8
1.2.24.01. Protein Vpu, cytoplasmic domain, structure in aqueous solution 1vpu Eukaryo. plasma 1 0 7.4 ± 2.1 64 ± 5 -5.6
1.2.24.01. Protein Vpu, cytoplasmic domain, in DPC micelles 2k7y Eukaryo. plasma 1 0 4.5 ± 1.4 54 ± 17 -5.4
2.1.39.01. Viral protein R, full length 1m8l Eukaryo. plasma 1 0 4.7 ± 2.8 64 ± 36 -4.0
2.2.03.02. Retropepsin 2q63 Eukaryo. plasma 2 0 4.5 ± 0.4 89 ± 4 -10.4
2.4.15.01. Protein Nef (HIV HV1LW) 2nef Eukaryo. plasma 1 0 6.3 ± 1.4 73 ± 3 -7.9
2.4.15.01. Protein Nef, complex with tyrosine-protein kinase SH3 domain (HIV HV1A2) 3rbb Eukaryo. plasma 2 0 2.4 ± 1.1 84 ± 6 -4.2
2.4.15.01. Protein Nef (HIV 9HIV1) 2xi1 Eukaryo. plasma 1 0 4.3 ± 0.6 57 ± 5 -5.0
2.4.15.01. Protein Nef 1avv Eukaryo. plasma 1 0 3.0 ± 1.5 75 ± 13 -3.4
2.4.15.01. Protein Nef, N-terminal helix (HIV HV1B1) 1zec Eukaryo. plasma 1 0 3.6 ± 4.1 89 ± 2 -6.8
3.1.04.03. Viral protein R, peptide 50-82 1bde Eukaryo. plasma 1 0 3.8 ± 1.1 89 ± 24 -6.7
3.1.04.03. Viral protein R, peptide 59-86 1dsk Eukaryo. plasma 1 0 9.5 ± 0.4 65 ± 6 -11.7
3.1.04.03. Viral protein R, peptide 52-96, dimer, different strain 1x9v Eukaryo. plasma 1 0 7.2 ± 0.7 86 ± 4 -8.6
3.1.04.03. Viral protein R, peptide 13-33, different strain 1fi0 Eukaryo. plasma 1 0 2.7 ± 1.2 88 ± 8 -8.6
3.1.04.03. Viral protein R, peptide 34-51 1kzt Eukaryo. plasma 1 0 7.4 ± 0.6 77 ± 7 -10.3
3.1.07.01. Probable fusion peptide (93-126, 138-160) of protein gp41 2mk3 Endosome 1 2 20.8 ± 0.5 18 ± 1 -13.2
3.1.07.01. Fusion peptide (671-693) of protein gp41 2mg2 Endosome 1 1 22.2 ± 1.9 34 ± 1 -15.1
3.1.07.01. Fusion peptide (510-532) of protein gp41 2pjv Endosome 1 0 8.7 ± 3.8 64 ± 4 -10.9
3.1.07.01. Fusion peptide (683-704) of protein gp41 2mg1 Endosome 1 1 30.8 ± 0.5 19 ± 3 -19.4
3.1.07.01. Fusion peptide (517-539) of protein gp41 1p5a Endosome 1 1 25.8 ± 5.5 12 ± 3 -9.3
3.1.07.01. Fusion peptide (512-541) of protein gp41 2ari Endosome 1 0 10.0 ± 1.0 88 ± 9 -16.1
3.1.07.02. gp41-M-MAT, a membrane associated MPER trimer 2lp7 Viral 3 3 26.8 ± 0.9 1 ± 1 -14.2
3.1.07.02. Juxtamembrane peptide (636-662) of protein gp160 2me3 Endosome 1 0 6.1 ± 0.4 81 ± 7 -12.4
3.1.07.02. Transmembrane domain of HIV-1 gp41 (677-716), trimer 5jyn Viral 3 3 36.0 ± 1.6 0 ± 2 -22.0
3.1.07.02. Envelope glycoprotein gp41 2x7r Viral 3 0 5.5 ± 1.1 0 ± 10 -10.9
3.1.07.02. Juxtamembrane peptide (662-683) of protein gp41 2pv6 Endosome 1 0 6.7 ± 0.6 82 ± 2 -13.5
3.1.07.02. Juxtamembrane peptide (651-677) of protein gp160 2me2 Endosome 1 0 7.0 ± 1.1 82 ± 7 -13.1
3.1.07.02. Membrane proximal external helix of HIV-1 gp41 (656-683) 2m8o Viral 1 0 6.0 ± 5.2 90 ± 4 -5.0
3.1.07.02. Juxtamembrane peptide (662-683) of protein gp160 4g6f Endosome 1 0 4.9 ± 1.4 86 ± 0 -5.0
3.1.07.02. Juxtamembrane peptide (657-683) of protein gp160 2me1 Endosome 1 0 7.7 ± 3.8 82 ± 1 -15.0
3.1.07.02. Juxtamembrane peptide (659-685) of protein gp160 2fx7 Endosome 1 0 6.2 ± 1.0 73 ± 7 -8.0
3.1.07.02. Juxtamembrane peptide (671-697) of protein gp160 2me4 Endosome 1 0 7.9 ± 2.9 81 ± 4 -14.0
3.1.07.02. Membrane proximal peptide of gp41 (95-121) 2ncs Viral 1 0 20.8 ± 2.0 28 ± 3 -14.6
3.1.07.02. Juxtamembrane peptide (665-683) of protein gp41 1jau Endosome 1 0 4.0 ± 4.2 86 ± 2 -8.0