PDB ID or protein name

Rattus norvegicus (132 proteins)

Family Protein Name PDB ID Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.1.01.02. Neurotensin receptor type 1, structure 1 4grv Eukaryo. plasma 1 7 31.6 ± 1.1 4 ± 1 -75.1
1.1.01.02. Muscarinic acetylcholine receptor M3, structure 2 4u15 Eukaryo. plasma 1 7 31.8 ± 1.5 1 ± 1 -70.6
1.1.01.02. Neurotensin receptor type 1, structure 4 5t04 Eukaryo. plasma 1 7 31.4 ± 0.8 7 ± 1 -69.8
1.1.01.02. Muscarinic acetylcholine receptor M3, structure 1 4daj Eukaryo. plasma 1 7 32.2 ± 1.2 5 ± 0 -75.8
1.1.01.02. Neurotensin receptor type 1, structure 3 4xes Eukaryo. plasma 1 7 31.8 ± 1.4 5 ± 1 -68.3
1.1.01.02. Neurotensin receptor type 1, structure 2 4buo Eukaryo. plasma 1 7 31.4 ± 1.4 6 ± 2 -62.6
1.1.12.02. Potassium channel Kv1.2 - Kv2.1. chimera, inactivated state 5wie Eukaryo. plasma 4 24 30.6 ± 0.4 0 ± 0 -245.0
1.1.12.02. Potassium channel Kv1.2 - Kv2.1. chimera, in membrane-like environment 2r9r Eukaryo. plasma 4 28 30.8 ± 0.6 0 ± 0 -252.0
1.1.12.02. Potassium channel Kv1.2., full-length 3lut Eukaryo. plasma 4 24 25.1 ± 0.5 0 ± 0 -153.1
1.1.12.02. Potassium channel Kv1.2. 2a79 Eukaryo. plasma 4 28 29.8 ± 1.5 0 ± 0 -147.0
1.1.12.02. Potassium channel Kv1.2. - Kv2.1. chimera 3lnm Eukaryo. plasma 4 28 31.1 ± 0.9 0 ± 0 -260.7
1.1.12.02. Potassium channel Kv1.2. - Kv2.1. chimera, complex with Charybdotoxin 4jtc Eukaryo. plasma 4 24 30.2 ± 0.4 0 ± 0 -247.3
1.1.12.12. K+ channel Eag1 (Kcnh1), with calmodulin 5k7l Eukaryo. plasma 4 24 33.8 ± 0.6 0 ± 0 -272.0
1.1.12.14. TRPV1 ion channel, complex with DkTx and RTX toxins 3j5q Eukaryo. plasma 4 24 30.0 ± 0.5 0 ± 0 -203.0
1.1.12.14. TRPV1, in lipid nanodisc 5irz Eukaryo. plasma 4 24 30.4 ± 0.7 0 ± 0 -208.9
1.1.12.14. TRPV6 channel, structure 2a, monomer 5woa Eukaryo. plasma 1 6 30.2 ± 1.6 12 ± 6 -85.2
1.1.12.14. TRPV1 ion channel 3j5p Eukaryo. plasma 4 24 28.4 ± 0.7 0 ± 0 -213.2
1.1.12.14. TRPV1 with DkTx and RTX, in lipid nanodisc 5irx Eukaryo. plasma 4 24 29.6 ± 0.5 0 ± 0 -190.8
1.1.12.14. TRPV2 channel 5hi9 Eukaryo. plasma 4 24 30.2 ± 1.0 0 ± 0 -187.5
1.1.12.14. TRPV6 channel, structure 2, monomer 5wo9 Eukaryo. plasma 1 6 30.2 ± 1.0 20 ± 0 -86.5
1.1.12.14. TRPV6 channel, structure 1, tetramer 5iwk Eukaryo. plasma 4 24 30.4 ± 0.6 0 ± 0 -244.6
1.1.12.14. TRPV6 channel, structure 1, monomer 5wo6 Eukaryo. plasma 1 6 28.6 ± 1.2 26 ± 0 -68.6
1.1.12.19. ATP-sensitive K+ channel SUR1/Kir6.2, structure 2 5twv Eukaryo. plasma 8 76 31.8 ± 0.4 0 ± 0 -311.7
1.1.12.19. ATP-sensitive K+ channel SUR1/Kir6.2, structure 1 6baa Eukaryo. plasma 8 76 31.4 ± 0.4 0 ± 0 -443.7
1.1.14.01. Aquaporin-4 2d57 Eukaryo. plasma 4 32 29.8 ± 1.1 0 ± 0 -126.2
1.1.14.01. Aquaporin-4, different conformation of loops with lipids 2zz9 Eukaryo. plasma 4 28 29.5 ± 0.7 0 ± 0 -115.6
1.1.16.01. Glutamate receptor 2, with antagonist, structure 1 3kg2 Eukaryo. plasma 4 12 31.8 ± 2.0 0 ± 0 -93.0
1.1.16.01. Glutamate receptor 2, with antagonist, structure 2 4uqj Eukaryo. plasma 4 12 33.6 ± 1.6 0 ± 0 -87.3
1.1.16.01. Glutamate receptor 2, with partial agonist, structure 3 4u1w Eukaryo. plasma 4 12 30.8 ± 0.9 1 ± 0 -92.7
1.1.16.01. Glutamate receptor 2, with conotoxin, structure 3 4u5f Eukaryo. plasma 4 12 31.8 ± 1.1 2 ± 1 -84.9
1.1.16.01. Glutamate receptor 2, with TARP channel, structure 1 5kk2 Eukaryo. plasma 8 32 34.0 ± 0.4 1 ± 0 -123.2
1.1.16.01. Glutamate receptor 2, with TARP channel, structure 4 5vov Eukaryo. plasma 8 20 31.4 ± 0.4 0 ± 0 -232.0
1.1.16.01. Glutamate receptor 2, with partial agonist, structure 2 4u1y Eukaryo. plasma 4 12 30.6 ± 1.3 6 ± 2 -93.2
1.1.16.01. Glutamate receptor 2, with conotoxin, structure 2 4u5c Eukaryo. plasma 4 12 31.4 ± 1.1 1 ± 1 -95.7
1.1.16.01. Glutamate receptor 2-Cacng-2 subunit chimera, structure 2 5kbu Eukaryo. plasma 4 20 33.6 ± 1.4 0 ± 0 -109.5
1.1.16.01. Glutamate receptor ionotropic, kainate 2 5kuf Eukaryo. plasma 4 12 31.4 ± 0.6 0 ± 0 -81.8
1.1.16.01. Glutamate receptor 2, with auxiliary subunit GSG1L, structure 2 5vhz Eukaryo. plasma 6 20 33.0 ± 0.8 0 ± 0 -171.5
1.1.16.01. Glutamate receptor 2, with TARP channel, structure 3 5vou Eukaryo. plasma 8 20 32.2 ± 0.8 0 ± 0 -232.0
1.1.16.01. Glutamate receptor 2-Cacng-2 subunit chimera, structure 3 5weo Eukaryo. plasma 27 4 32.2 ± 1.2 0 ± 0 -236.7
1.1.16.01. Glutamate receptor 2, with partial agonist, structure 1 4u1x Eukaryo. plasma 4 12 29.8 ± 0.8 0 ± 0 -79.3
1.1.16.01. Glutamate receptor 2, with conotoxin, structure 1 4u5b Eukaryo. plasma 4 12 31.6 ± 1.1 0 ± 0 -91.5
1.1.16.01. Glutamate receptor 2, with partial agonist, structure 6 4u4g Eukaryo. plasma 4 12 33.0 ± 1.6 0 ± 0 -79.1
1.1.16.01. Glutamate receptor 2-Cacng-2 subunit chimera, structure 1 5kbt Eukaryo. plasma 4 16 34.0 ± 0.6 2 ± 1 -100.7
1.1.16.01. Glutamate receptor 2, with noncompetitive inhibitor 5l1h Eukaryo. plasma 4 12 36.4 ± 0.7 0 ± 0 -100.1
1.1.16.01. Glutamate receptor 2, with auxiliary subunit GSG1L, structure 1 5vhy Eukaryo. plasma 4 20 33.0 ± 0.8 0 ± 0 -176.6
1.1.16.01. Glutamate receptor 2, with TARP channel, structure 2 5vot Eukaryo. plasma 8 20 31.4 ± 1.2 1 ± 0 -222.9
1.1.16.01. Glutamate receptor 2, with auxiliary subunit GSG1L, structure 4 5wel Eukaryo. plasma 4 20 33.0 ± 1.0 0 ± 0 -157.2
1.1.16.01. Glutamate receptor ionotropic, NMDA 1 4pe5 Eukaryo. plasma 4 12 28.6 ± 0.8 0 ± 0 -25.4
1.1.16.01. Glutamate receptor 2, apo state, structure 1 4u2p Eukaryo. plasma 4 12 31.8 ± 0.8 4 ± 3 -91.4
1.1.16.01. Glutamate receptor 2, with partial agonist, structure 4 4u2q Eukaryo. plasma 4 12 31.6 ± 1.3 6 ± 4 -78.2
1.1.16.01. Glutamate receptor 2, with partial agonist, structure 5 4u4f Eukaryo. plasma 4 12 30.2 ± 1.2 0 ± 0 -54.0
1.1.16.01. Glutamate receptor 2, apo state, structure 2 5l1b Eukaryo. plasma 4 12 36.0 ± 0.8 3 ± 1 -119.7
1.1.16.01. Glutamate receptor 2, with auxiliary subunit GSG1L, structure 3 5wek Eukaryo. plasma 4 20 33.0 ± 1.4 1 ± 0 -162.4
1.1.25.06. Glucose transporter GLUT5, outward-open 4ybq Eukaryo. plasma 1 12 32.4 ± 3.0 5 ± 0 -110.6
1.1.26.07. STAS domain of prestin 3llo Eukaryo. plasma 1 0 5.4 ± 0.6 68 ± 4 -5.3
1.1.61.01. Microsomal glutathione S-transferase 1, structure 1 2h8a Endoplasm. reticulum 3 12 29.7 ± 0.7 0 ± 1 -47.7
1.1.61.01. Microsomal glutathione S-transferase 1, structure 2 5i9k Endoplasm. reticulum 3 12 25.8 ± 0.2 0 ± 0 -26.4
1.2.01.01. Receptor tyrosine-protein kinase erbB-2 1n8y Eukaryo. plasma 1 0 3.4 ± 3.0 53 ± 5 -4.2
1.2.01.01. Receptor tyrosine kinase erbB-2 1iij Eukaryo. plasma 1 1 31.8 ± 2.8 27 ± 2 -31.8
1.2.03.03. Myelin protein P0 1neu Eukaryo. plasma 1 0 5.4 ± 1.8 70 ± 8 -6.6
1.2.03.07. Netrin receptor UNC5B 3g5b Eukaryo. plasma 1 0 1.9 ± 2.5 90 ± 14 -8.5
1.2.14.01. Transforming growth factor beta receptor type 3 3qw9 Eukaryo. plasma 2 0 3.1 ± 0.3 87 ± 4 -9.9
1.2.17.01. Complexin/SNARE complex 1kil Eukaryo. plasma 5 0 4.0 ± 2.0 15 ± 14 -3.4
1.2.17.01. SNARE complex with synaptotagmin1 2n1t Eukaryo. plasma 5 0 2.6 ± 2.9 42 ± 16 -4.6
1.2.17.01. Syntaxin 1A, pre-fusion structure in micelles 2m8r Eukaryo. plasma 1 2 20.8 ± 0.5 8 ± 5 -20.5
1.2.17.01. SNARE complex (syntaxin 1A, SNAP-25 and synaptobrevin 2) 3hd7 Eukaryo. plasma 2 2 28.5 ± 1.9 3 ± 7 -29.3
1.2.17.01. Vesicle-associated membrane protein 2 2kog Eukaryo. plasma 1 1 34.8 ± 1.7 27 ± 1 -33.7
1.2.17.02. Synaptobrevin homolog YKT6 3kyq Vesicle 1 0 2.5 ± 2.0 53 ± 8 -4.9
1.2.19.01. Mitochondrial import receptor subunit TOM20, 59-126, with presequence peptide 3awr Mitochon. outer 2 0 5.0 ± 2.6 32 ± 7 -4.1
1.2.19.01. Mitochondrial import receptor subunit TOM20, 51-145, with presequence peptide 1om2 Mitochon. outer 2 0 2.9 ± 2.7 76 ± 7 -4.8
1.2.25.02. Na,K-ATPase regulatory protein FXYD4 2jp3 Eukaryo. plasma 1 1 31.8 ± 3.2 18 ± 7 -20.2
1.2.32.01. Cytochrome P450 24a1 (1,25-dihydroxyvitamin D(3) 24-hydroxylase) 3k9v Mitochon. inner 1 0 6.6 ± 1.0 49 ± 6 -9.6
1.2.33.02. Monoamine oxidase A 1o5w Mitochon. outer 1 1 31.4 ± 3.4 20 ± 3 -23.1
1.2.35.01. Fatty acid amide hydrolase 1mt5 Endoplasm. reticulum 2 0 11.1 ± 0.2 89 ± 0 -21.9
1.2.49.01. Tumor necrosis factor receptor 16, structure 2 2mjo Eukaryo. plasma 2 2 22.6 ± 3.5 2 ± 1 -23.4
1.2.49.01. Tumor necrosis factor receptor 16, structure 1 2mic Eukaryo. plasma 2 2 29.2 ± 2.5 7 ± 4 -26.6
1.2.54.01. Dihydroorotate dehydrogenase 1uum Mitochon. inner 1 0 6.9 ± 0.4 50 ± 6 -6.3
2.1.15.01. Epsin-1 1h0a Eukaryo. plasma 1 0 3.2 ± 1.1 39 ± 19 -5.3
2.1.15.03. Clathrin assembly lymphoid myeloid leukemia (CALM) protein 1hfa Eukaryo. plasma 1 0 14.2 ± 2.0 44 ± 14 -17.9
2.1.18.01. Annexin IV 2zhj Eukaryo. plasma 1 0 4.1 ± 1.0 80 ± 1 -7.6
2.1.18.01. Annexin V 1a8a Eukaryo. plasma 3 0 2.1 ± 1.1 89 ± 10 -8.9
2.1.40.01. Protein unc-13 homolog A, MHD domain 3swh Eukaryo. plasma 1 0 6.6 ± 3.0 27 ± 12 -6.8
2.1.51.01. Protein farnesyltransferase/geranylgeranyltransferase 1jcr Eukaryo. plasma 2 0 3.2 ± 2.3 56 ± 5 -5.6
2.1.60.02. Potassium channel blocking domain of matrix metalloproteinase-23 2k72 Eukaryo. plasma 1 0 2.1 ± 2.3 77 ± 22 -4.4
2.2.06.01. Epididymal-specific lipocalin-5 1epb Secreted 1 0 6.4 ± 1.1 74 ± 4 -3.8
2.2.06.02. Cellular retinol-binding protein II 1crb Eukaryo. plasma 1 0 2.4 ± 1.7 52 ± 19 -5.3
2.2.06.02. Intestinal fatty acid binding protein, structure 1 1icm Eukaryo. plasma 1 0 3.5 ± 1.5 51 ± 18 -4.3
2.2.06.02. Retinol-binding protein 2 1opb Eukaryo. plasma 1 0 1.9 ± 1.4 25 ± 7 -3.6
2.2.11.01. Synaptotagmin-1, C2B domain (Calcium bound) 1uov Eukaryo. plasma 1 0 1.7 ± 1.8 36 ± 13 -3.7
2.2.11.01. Protein kinase C beta, C2 domain 1a25 Eukaryo. plasma 1 0 3.1 ± 1.0 44 ± 18 -2.8
2.2.11.01. C2 domain of otoferlin 3l9b Vesicle 1 0 2.4 ± 5.2 16 ± 33 -3.4
2.2.11.01. Synaptotagmin-1, C2A domain (Calcium bound) 1byn Eukaryo. plasma 1 0 3.8 ± 1.6 32 ± 19 -4.7
2.2.11.01. Synaptotagmin-3 3hn8 Eukaryo. plasma 1 0 4.0 ± 3.1 74 ± 19 -4.0
2.2.11.01. Rabphilin-3A, C2A domain 2chd Eukaryo. plasma 1 0 2.9 ± 1.6 57 ± 19 -2.7
2.2.11.01. Protein kinase C beta 3pfq Eukaryo. plasma 1 0 2.6 ± 0.9 45 ± 5 -3.4
2.2.11.01. Synaptotagmin-7, C2A- and C2B-domains 6ank Eukaryo. plasma 1 0 2.3 ± 0.6 66 ± 6 -5.2
2.2.11.01. Synaptotagmin-1 1rsy Eukaryo. plasma 1 0 2.5 ± 1.6 24 ± 17 -4.1
2.2.11.01. Rabphilin-3A, C2B domain 2cm5 Eukaryo. plasma 1 0 2.5 ± 2.0 56 ± 14 -4.1
2.2.11.01. Protein kinase C alpha, complex with phosphatidyl serine 1dsy Eukaryo. plasma 1 0 0.9 ± 1.5 18 ± 16 -3.0
2.2.11.01. Rab3 interacting molecule 2 (RIM2), C2A domain 2bwq Eukaryo. plasma 1 0 1.5 ± 1.6 41 ± 19 -1.8
2.2.11.01. Protein unc-13 homolog A, C2A domain 2cjs Eukaryo. plasma 1 0 3.5 ± 2.0 47 ± 12 -5.0
2.2.11.01. Protein unc-13 homolog A, C2C domain 3kwu Eukaryo. plasma 1 0 3.3 ± 1.9 67 ± 16 -3.6
2.2.12.04. AP-2 complex 2vj0 Vesicle 1 0 2.6 ± 2.0 80 ± 11 -4.8
2.2.18.01. Subunit mu of AP-2 clatrin adaptor complex, open conformation 2xa7 Vesicle 4 0 3.1 ± 2.2 84 ± 14 -5.9
2.2.20.01. Rho guanine nucleotide exchange factor 9 complex 2dfk Eukaryo. plasma 2 0 2.8 ± 2.7 69 ± 3 -5.0
2.2.20.01. Rho guanine nucleotide exchange factor 9, conformation 2 4mt6 Eukaryo. plasma 1 0 3.0 ± 1.9 68 ± 4 -5.1
2.2.20.01. Rho guanine nucleotide exchange factor 9, conformation 1 4mt7 Eukaryo. plasma 1 0 1.9 ± 2.6 52 ± 14 -3.9
2.2.20.01. PH domain of phospholipase C delta 1 1mai Eukaryo. plasma 1 0 15.0 ± 1.8 22 ± 14 -17.8
2.2.20.01. Myosin X 3tfm Endosome 1 0 1.5 ± 2.6 81 ± 5 -3.0
2.2.26.01. Rabphilin-3A 1zbd Eukaryo. plasma 2 0 3.8 ± 1.8 68 ± 15 -4.0
2.2.27.01. C1 domain of unc-13 homolog A 1y8f Eukaryo. plasma 1 0 2.5 ± 1.9 16 ± 17 -2.9
2.3.02.01. Phospholipase C-delta isoform 1 1djx Eukaryo. plasma 1 0 4.1 ± 0.9 68 ± 5 -7.2
2.3.06.01. Neuroligin-1, complex with neurexin-1-beta 3biw Eukaryo. plasma 2 0 5.9 ± 1.0 80 ± 3 -8.8
2.3.06.08. Pancreatic lipase 1bu8 Secreted 1 0 3.5 ± 1.3 87 ± 10 -6.1
2.3.09.01. Cytidylyltransferase, first membrane-anchoring helix 1peh Eukaryo. plasma 1 0 3.2 ± 0.6 90 ± 2 -5.0
2.3.09.01. Cytidylyltransferase 3hl4 Eukaryo. plasma 2 0 2.7 ± 4.0 74 ± 8 -3.2
2.3.09.01. Cytidylyltransferase, second membrane-anchoring helix 1pei Eukaryo. plasma 1 0 4.9 ± 1.0 83 ± 11 -8.2
2.3.13.02. Phosducin/Transducin beta-gamma complex, conformation 3 1b9x Eukaryo. plasma 3 0 1.0 ± 1.6 49 ± 12 -3.9
2.3.13.02. Phosducin/Transducin beta-gamma complex, conformation 2 2trc Eukaryo. plasma 3 0 2.2 ± 1.0 62 ± 10 -4.9
2.3.16.07. Ras-related protein Rab-7a 1vg8 Endosome 1 0 1.7 ± 0.5 74 ± 3 -5.3
2.3.18.01. Carnitine O-palmitoyltransferase 2 2h4t Mitochon. inner 1 0 4.0 ± 1.2 67 ± 10 -9.4
2.3.18.01. Choline O-acetyltransferase, different conformation 1t1u Eukaryo. plasma 1 0 2.1 ± 1.7 73 ± 15 -6.8
2.3.18.01. Choline O-acetyltransferase 1q6x Eukaryo. plasma 1 0 3.6 ± 0.6 75 ± 6 -8.5
2.4.06.02. Phosphatidylinositol transfer protein alpha isoform 1t27 Eukaryo. plasma 1 0 2.3 ± 1.9 12 ± 12 -4.1
2.4.06.02. Phosphatidylinositol transfer protein beta isoform 2a1l Eukaryo. plasma 1 0 4.7 ± 1.7 36 ± 17 -4.3
2.4.07.01. Sorting nexin-5 3hpc Endosome 1 0 0.0 ± 2.1 90 ± 8 -2.4
2.4.19.01. Protein CutA 1osc Eukaryo. plasma 3 0 1.3 ± 0.3 90 ± 1 -5.5
3.1.02.02. TM peptide (1567-1594) of voltage-gated sodium channel Nav1.4 5jr0 Eukaryo. plasma 1 1 30.8 ± 3.2 39 ± 2 -26.2
3.1.02.02. Sodium channel protein type 3 subunit alpha, TMH 2 1qg9 Eukaryo. plasma 1 0 6.8 ± 0.4 86 ± 3 -9.0
3.1.02.05. Acetylcholine receptor, subunit delta, TMH 2 1a11 Eukaryo. plasma 1 1 24.4 ± 5.6 17 ± 10 -14.2
3.1.12.01. Endothelin-1 3cmh Secreted 1 0 6.3 ± 3.9 72 ± 40 -4.8
3.1.13.01. Islet amyloid polypeptide, peptide 38-74 2kj7 Secreted 1 0 3.9 ± 4.3 90 ± 4 -4.2