PDB ID or protein name

Saccharomyces cerevisiae (80 proteins)

Family Protein Name PDB ID Localization Num. Subunits Num. TM Sec. Structs. Hydrophobic Thickness or Depth (Å) Tilt Angle (°) ΔGtransfer (kcal/mol)
1.1.01.02. TM1-TM2 fragment of fungal STE2 receptor 2k9p Eukaryo. plasma 1 2 29.8 ± 3.1 21 ± 4 -10.5
1.1.06.01. Cytochrome bc1, mitochondrial 1ezv Mitochon. inner 24 10 27.5 ± 0.6 1 ± 0 -170.6
1.1.06.01. Cytochrome bc1, mitochondrial, with cytochrome c iso-2 3cxh Mitochon. inner 24 10 27.6 ± 1.1 0 ± 0 -167.0
1.1.06.01. Cytochrome bc1, mitochondrial, with cytochrome c iso-1 3cx5 Mitochon. inner 10 24 27.2 ± 0.6 0 ± 0 -173.9
1.1.08.01. F1F0 ATP synthase, F0F1 complex 2xok Mitochon. inner 10 20 35.3 ± 1.3 0 ± 0 -58.9
1.1.08.01. F1F0 ATP synthase, F0F1 complex, more complete model 4b2q Mitochon. inner 10 20 38.4 ± 0.9 0 ± 0 -115.7
1.1.08.01. V-type proton ATPase, vacuolar, state 1 3j9t Vacuole 10 40 39.6 ± 1.3 1 ± 0 -169.3
1.1.08.01. F1F0 ATP synthase, F0F1 complex, structure 2 3zry Mitochon. inner 10 20 33.6 ± 1.9 4 ± 0 -56.0
1.1.08.01. F1F0 ATP synthase, F0 complex 4f4s Mitochon. inner 10 20 38.4 ± 1.3 0 ± 0 -89.9
1.1.08.01. V-type proton ATPase, vacuolar, state 3 3j9v Vacuole 10 40 40.0 ± 1.2 0 ± 0 -178.0
1.1.08.01. V-type proton ATPase, vacuolar 5tj5 Vacuole 13 54 35.8 ± 0.2 2 ± 0 -157.9
1.1.08.01. V-type proton ATPase, vacuolar, state 2 3j9u Vacuole 10 40 40.4 ± 1.1 0 ± 0 -180.4
1.1.10.03. Iron-sulfur clusters transporter ATM1 4myc Mitochon. inner 2 12 30.8 ± 1.4 3 ± 1 -56.1
1.1.11.01. Protein translocase Sec61, complex with ribosome, idle state 2wwa Endoplasm. reticulum 3 12 28.9 ± 1.6 4 ± 0 -72.4
1.1.11.01. Protein translocase Sec61, complex with ribosome, active state 2ww9 Endoplasm. reticulum 3 12 29.7 ± 1.7 5 ± 0 -85.5
1.1.113.01. ERAD-associated E3 ubiquitin-protein ligase component HRD3 5v7v Endoplasm. reticulum 1 0 8.3 ± 2.6 75 ± 3 -18.6
1.1.113.01. ERAD-associated E3 ubiquitin-protein ligase HRD1 5v6p Endoplasm. reticulum 2 16 30.2 ± 2.0 0 ± 0 -48.4
1.1.17.01. Ammonium transporter MEP2 5aex Eukaryo. plasma 3 33 29.4 ± 1.4 0 ± 0 -121.0
1.1.34.01. Mitochondrial ADP-ATP carrier, conformation 1 4c9g Mitochon. inner 1 6 31.4 ± 1.5 1 ± 1 -54.6
1.1.34.01. Mitochondrial ADP-ATP carrier, dimer, conformation 1 4c9h Mitochon. inner 2 12 30.4 ± 0.7 0 ± 0 -121.4
1.1.34.01. Mitochondrial ADP-ATP carrier, conformation 2 4c9q Mitochon. inner 1 6 30.2 ± 1.1 4 ± 1 -57.7
1.1.40.01. Glutamate-dependent intramembrane protease Rce1 4cad Endoplasm. reticulum 1 8 30.8 ± 1.3 0 ± 1 -86.1
1.1.64.01. Vacuolar calcium ion transporter 4k1c Vacuole 1 11 29.8 ± 1.0 3 ± 0 -87.5
1.1.95.02. Ceramide fatty acid hydroxylase SCS7 4zr1 Endoplasm. reticulum 1 4 28.2 ± 1.6 34 ± 0 -50.6
1.2.15.02. Signal recognition particle receptor 1nrj Endoplasm. reticulum 2 0 3.9 ± 1.4 82 ± 11 -5.5
1.2.17.02. Synaptobrevin homolog 1 1iou Eukaryo. plasma 1 0 3.4 ± 1.1 79 ± 12 -6.0
1.2.32.01. Lanosterol 14-alpha demethylase (CYP51), with drug 4wmz Endoplasm. reticulum 1 1 29.8 ± 0.7 39 ± 0 -36.1
1.2.32.01. Lanosterol 14-alpha demethylase (CYP51), with lanosterol 5eqb Endoplasm. reticulum 1 1 29.8 ± 0.9 39 ± 2 -34.5
1.2.34.01. Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit 4 (OST4) 1rkl Endoplasm. reticulum 1 1 24.8 ± 3.2 22 ± 8 -18.4
1.2.40.01. Mitochondria fission 1 protein 1y8m Mitochon. outer 1 0 5.2 ± 0.6 88 ± 1 -5.2
1.2.61.01. Mitochondrial inner membrane translocase subunit TIM50 4qqf Mitochon. inner 1 0 5.4 ± 0.8 76 ± 1 -7.0
2.1.14.03. Vesicular transport protein sec17 1qqe Vacuole 1 0 5.2 ± 6.1 17 ± 15 -6.2
2.1.15.01. Epsin-1 5ahv Eukaryo. plasma 2 0 7.5 ± 2.0 20 ± 6 -8.3
2.1.36.01. Endoplasmic reticulum oxidoreductin, a mutant 3m31 Endoplasm. reticulum 1 0 1.9 ± 1.2 27 ± 9 -6.2
2.1.36.01. Endoplasmic reticulum oxidoreductin 1rp4 Endoplasm. reticulum 1 0 2.0 ± 1.8 16 ± 9 -4.7
2.2.03.01. Saccharopepsin 1fq5 Vacuole 1 0 3.8 ± 0.8 84 ± 6 -8.1
2.2.09.04. Nucleoporin NUP120 3f7f Nuclear inner 1 0 9.3 ± 2.1 66 ± 5 -11.0
2.2.09.05. Peroxisomal targeting signal 2 receptor, comnplex with Pex21p and thiolase 3w15 Peroxisome 3 0 5.2 ± 1.6 84 ± 7 -5.8
2.2.20.01. Phosphatidylinositol 4,5-bisphosphate-binding protein SLM1 4a6f Eukaryo. plasma 1 0 1.9 ± 1.6 62 ± 4 -6.1
2.2.20.01. Phosphatidylinositol 4,5-bisphosphate-binding protein SLM1 3nsu Eukaryo. plasma 1 0 0.8 ± 1.5 57 ± 12 -4.0
2.2.20.01. PH domain of oxysterol-binding protein homolog 3, fused with lysozyme 4iap Endoplasm. reticulum 1 0 2.5 ± 2.3 81 ± 3 -3.6
2.2.26.01. FYVE domain of Vps27 protein 1vfy Vacuole 1 0 3.7 ± 1.8 24 ± 19 -4.2
2.3.01.05. 1,3-beta-glucanosyltransferase, structure 3 5fih Eukaryo. plasma 1 0 2.5 ± 0.6 89 ± 1 -5.3
2.3.01.05. 1,3-beta-glucanosyltransferase, structure 2 2w62 Eukaryo. plasma 1 0 2.7 ± 0.5 90 ± 1 -6.1
2.3.01.05. 1,3-beta-glucanosyltransferase, structure 1 2w61 Eukaryo. plasma 1 0 2.4 ± 2.3 60 ± 7 -5.4
2.3.05.02. Rotenone-insensitive NADH-ubiquinone oxidoreductase, NDI1 4g6h Mitochon. inner 2 0 4.8 ± 0.0 88 ± 1 -13.9
2.3.05.05. Secretory pathway GDP dissociation inhibitor 2bcg Endoplasm. reticulum 2 0 3.5 ± 1.0 70 ± 6 -8.5
2.3.06.11. Monoglyceride lipase 4zwn Endoplasm. reticulum 1 0 4.3 ± 1.7 11 ± 17 -7.5
2.3.11.01. Ferrochelatase, mitochondrial 1lbq Mitochon. inner 2 0 5.3 ± 0.5 90 ± 3 -6.9
2.3.14.01. Phosphatidylinositol transfer protein sec14p 1aua Golgi 1 0 8.8 ± 1.1 75 ± 10 -14.3
2.3.14.01. Phosphatidylinositol transfer protein PDR16 4fmm Endoplasm. reticulum 1 0 9.9 ± 2.6 78 ± 19 -13.9
2.3.14.01. Yeast Sec14 Homolog Sfh1 (YKL091C) 3b7n Nuclear outer 1 0 2.9 ± 1.5 65 ± 18 -5.8
2.3.15.02. FAD synthase 2wsi Mitochon. inner 1 0 3.3 ± 1.7 65 ± 17 -4.0
2.3.16.05. ATPase Get3, homodimer 3a36 Endoplasm. reticulum 2 0 5.6 ± 3.0 66 ± 10 -6.6
2.3.16.05. ATPase Get3, complex with Get1 cytosolic domain 3sja Endoplasm. reticulum 4 0 6.4 ± 1.6 89 ± 45 -8.1
2.3.16.06. ADP-ribosylation factor-like protein 1 1moz Golgi 2 0 0.7 ± 1.1 90 ± 6 -4.3
2.3.16.06. ADP-ribosylation factor 1 (ARF1) 2k5u Golgi 1 0 2.9 ± 1.6 24 ± 18 -5.5
2.3.16.06. ADP-ribosylation factor 1 (ARF1), different conformation 2ksq Golgi 1 0 4.7 ± 0.1 62 ± 0 -10.4
2.3.17.01. Phospho-2-dehydro-3-deoxyheptonate aldolase 1of8 Undefined 2 0 7.2 ± 0.4 80 ± 6 -9.3
2.3.17.02. Folic acid synthesis protein FOL1 2bmb Mitochon. inner 1 0 2.0 ± 0.6 31 ± 2 -5.8
2.4.07.01. PX domain of sorting nexin GRD19, ligand-bound 1ocu Endosome 2 0 15.3 ± 0.8 88 ± 6 -34.9
2.4.07.01. PX domain of vacuolar morphogenesis protein VAM7 1kmd Vacuole 1 0 3.4 ± 1.2 76 ± 8 -7.8
2.4.07.01. PX domain of sorting nexin GRD19, ligand-free 1ocs Endosome 1 0 2.5 ± 1.1 88 ± 11 -5.4
2.4.07.01. Bud emergence protein 1 2v6v Eukaryo. plasma 1 0 2.1 ± 1.2 75 ± 6 -5.1
2.4.13.01. Oxysterol-binding protein homolog 4, conformation 2 1zhy Golgi 1 0 0.9 ± 0.4 87 ± 4 -4.7
2.4.13.01. Oxysterol-binding protein homolog 6, conformation 1 4b2z Endoplasm. reticulum 1 0 1.3 ± 1.3 86 ± 6 -4.6
2.4.13.01. Oxysterol-binding protein homolog 4 (KES1), N-terminal helix removed 1zi7 Golgi 1 0 2.5 ± 0.5 75 ± 8 -6.9
2.4.13.01. Oxysterol-binding protein homolog 3 4ic4 Endoplasm. reticulum 1 0 4.3 ± 0.9 86 ± 29 -5.9
2.4.13.01. Oxysterol-binding protein homolog 4, conformation 4 3spw Golgi 1 0 7.3 ± 1.1 60 ± 9 -4.5
2.4.13.01. Oxysterol-binding protein homolog 4, conformation 1 1zhx Golgi 1 0 1.2 ± 0.9 90 ± 7 -5.0
2.4.13.01. Oxysterol-binding protein homolog 4, conformation 3 4jch Golgi 1 0 1.2 ± 0.2 88 ± 1 -6.0
2.4.13.01. Oxysterol-binding protein homolog 6, conformation 2 4ph7 Endoplasm. reticulum 1 0 2.5 ± 0.9 75 ± 2 -6.4
2.4.38.01. Ups1 transporter-Mdm35 complex, structure 1 4xiz Mitochon. inner 2 0 2.0 ± 1.7 19 ± 13 -4.1
2.4.38.01. Ups1 transporter-Mdm35 complex, structure 2 4ytx Mitochon. inner 2 0 5.4 ± 1.0 78 ± 0 -6.3
3.1.02.04. V-type proton ATPase subunit a, vacuolar isoform, TMH 7 2jtw Vacuole 1 1 20.8 ± 6.5 8 ± 7 -7.7
3.1.02.07. Na(+)/H(+) antiporter, TMH IV 2m7x Eukaryo. plasma 1 1 23.0 ± 3.1 9 ± 2 -21.2
3.1.02.07. Na(+)/H(+) antiporter, TMH IV, fusion construct 2m7w Eukaryo. plasma 3 3 26.8 ± 0.1 0 ± 2 -5.7
3.1.03.02. Serine/threonine-protein kinase TOR1, FATC domain 2kit Vacuole 1 0 6.3 ± 1.0 87 ± 18 -6.4
3.1.03.06. 12 kDa heat shock protein 4axp Eukaryo. plasma 1 0 2.5 ± 0.1 74 ± 0 -5.5
3.1.04.01. Protein STE5, peptide 44-67 2kgn Eukaryo. plasma 1 0 6.4 ± 0.9 84 ± 7 -9.8